In order to profile/analyze .NET managed services, make sure to run VSPerfCLREnv /globalsampleon from the command line.
VSPerfCLREnv can be found under:
C:\Program Files\Microsoft Visual Studio 10.0\Team Tools\Performance Tools
More details here.
Note that profiling is not available for all VS releases. I had to get a VS 2010 Premium just for that. It is also available for the TEAM editions.
Happy Profiling!
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